Believe me, I've had my printer disassembled for the last week and a half... I've run every chemical through that I've got to get the print head back to functioning, after sitting idle and clogging.
If Acetone was going to deteriorate the tubing, it would have done it when I accidently left some tube in a jar overnight. But it's actually very compatible with the ink. Denatured Alcohol makes the ink clot in bunches as it strips the carrier solvent away. So don't use that. It could actually make any clogging problems worse.
Remember, Acetone is technically a thinner and it thins out the Dipropylene Glycol & Mono-Methyl Ether very well. Both of which are found in the solvent cleaner, and as the carrier fluid for the dispersed pigment ink.