are you printing bi-directional?
usually when it's a feed calibration issue (media comp in Mimaki terms) it would show banding right from the get-go, but I had a similar issue 2 months ago, and will still be working further to resolve it, but there is another calibration for bi-directional printing, and there a test print that my tech support guy had me run to check for it, which prints a row of colored boxes next to a small print file that you run it with. I forget what it's called, but it clearly showed my printed areas laid down by the left-to-right travel did not align with the sections of the print laid down by right-to-left travel.
The short term fix was to run in uni-directional, and push my number of passes from 8 to 12. It obviously prints a lot slower, but we immediately had much better prints.
The rest of the solution involves some more complicated calibration correction that I could be trained over the phone to do, but some test prints are being evaluated for evidence of a possible need for a print head replacement. I've not had a tech out here in 2-1/2 years, and if it's time for getting one back out here, I'll just let them do the calibration adjustment.
Anyway, try what I did, it might help. Maybe someone here will know what that test we did was called. We print with Flexi, and I think we called up the test from there, not from the printer control panel.