This is a scan alignment issue. The pinch rollers and grit rollers only control the feed or front to back alignment. I would suggest the following steps, in the given order.
Initialize the Limit
Aging - Feed, Scan and Cutting
Linear Encoder
Crop-Cut Alignment
Print-Cut Alignment
This will re-calibrate the movement system of the printer. You did not specify the model. On some models there is an adjustment in the user menu called Environmental Match. This is something that should be done when there are environmental changes, humidity, temperature, etc. This compensates from micro changes in the length of the encoder strip, which is a piece of film and is impacted environmental changes. This is why encoder strips are always attached with a spring on the left end.
Let us know the results...