What type of laminate are you using? If you're doing a spray lam I think you can just set operation mode to "print & cut" under Cut Controls, let it do it's thing, then spray it and weed it. I could be wrong though, never done it myself. If you do it this way, make sure you only use pinch rollers on the right and left sides, otherwise when it pulls it back to do the cut the pinch rollers in the middle will track ink all over and you'll ruin your print. If you're using "regular" laminate, under Mark, check off "Crop Marks (Print & Cut Alignment)", and under Cut Controls, set operation mode to print only. This'll print 4 big black dots around the corners of your print, along with a black rectangle in the lower right hand corner. Also make sure you haven't checked off "Center on Media" under Layout. When it's printed, hold the down arrow on the printer for a few seconds to run out a little bit of extra media, then do a sheet cut, laminate it, trim off any excess if you need to to get it to fit back in your printer, and load it back in the printer the same way it came out, making sure to line up that rectangle with the print head. Once it's secured and lined up, go back to versaworks and under Cut Controls, set operation mode to "Cut Only", and as crazy as it sounds, "Print" it. It should scan for the registration marks and make the cuts. You may have to adjust your cut settings or do 2 or 3 cuts to compensate for the laminate, but yea, that about sums it up.
Do you have a copy of the Roland Mystery Book? If not PM me your e-mail and I'll send it to you, it's got alot of information I think you could use.